Neugebauer KM: Nascent RNA and the Coordination of Splicing with Transcription Cold Spring Harb Perspect Biol. 2019 Aug 1. PMID: 31371351

Hochberg-Laufer H, Schwed-Gross A, Neugebauer KM, and Shav-Tal Y: Uncoupling of nucleo-cytoplasmic RNA export and localization during stress. Nucleic Acids Res. 2019 May 21. PMID: 30864659

Rodenfels J, Neugebauer KM, and Howard J: Heat Oscillations Driven by the Embryonic Cell Cycle Reveal the Energetic Costs of Signaling. Developmental Cell. 2019 Jan 31. PMID: 30713074


Reimer KA and Neugebauer KM: Blood Relatives: Splicing Mechanisms underlying Erythropoiesis in Health and Disease [version 1; referees: 3 approved]. F1000Research. 2018 Aug 30.

Herzel L, Straube K, Neugebauer KM: Long-read sequencing of nascent RNA reveals coupling among RNA processing events. Genome Research. 2018 Jun 14. PMID: 29903723 

Arias Escayola D, Neugebauer KM: Dynamics and function of nuclear bodies during embryogenesis. Biochemistry. 2018 Mar 7. PMID: 29473743 

Despic V, Neugebauer KM: RNA tales - how embryos read and discard messages from mom. J Cell Sci. 2018 Mar 1. PMID: 29467249


Brugiolo M, Botti V, Liu N, Müller-McNicoll M, Neugebauer KM: Fractionation iCLIP detects persistent SR protein binding to conserved, retained introns in chromatin, nucleoplasm and cytoplasm. Nucleic Acids Res. 2017 Oct 13. PMID: 28977534

Herzel L, Ottoz DSM, Alpert T, Neugebauer KM: Splicing and transcription touch base: co-transcriptional spliceosome assembly and function. Nat Rev Mol Cell Biol. 2017 Oct; 2017 Aug 9. PMID: 28792005

Despic V, Dejung M, Butter F, Neugebauer KM: Analysis of RNA-protein interactions in vertebrate embryos using UV crosslinking approaches. Methods. 2017 Aug 15; 2017 Jul 19. PMID: 28734934

Botti V, McNicoll F, Steiner MC, Richter FM, Solovyeva A, Wegener M, Schwich OD, Poser I, Zarnack K, Wittig I, Neugebauer KM, Müller-McNicoll M: Cellular differentiation state modulates the mRNA export activity of SR proteins. J Cell Biol. 2017 Jul 3; 2017 Jun 7. PMID: 28592444

Despic V, Dejung M, Gu M, Krishnan J, Zhang J, Herzel L, Straube K, Gerstein MB, Butter F, Neugebauer KM: Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition. Genome Res. 2017 Jul; 2017 Apr 5. PMID: 28381614

Neugebauer KM: Special focus on the Cajal Body. RNA Biol. 2017 Jun 3. PMID: 28486008

Heyn P, Salmonowicz H, Rodenfels J, Neugebauer KM: Activation of transcription enforces the formation of distinct nuclear bodies in zebrafish embryos. RNA Biol. 2017 Jun 3; 2016 Nov 18. PMID: 27858508

Alpert T, Herzel L, Neugebauer KM: Perfect timing: splicing and transcription rates in living cells. Wiley Interdiscip Rev RNA. 2017 Mar; 2016 Nov 21. PMID: 27873472

Heyn P, Neugebauer KM: Purification of Zygotically Transcribed RNA through Metabolic Labeling of Early Zebrafish Embryos. Methods Mol Biol. 2017. PMID: 28456961

Courchaine EM, Lu A, Neugebauer KM: Droplet organelles? EMBO J. 2016 Aug 1; 2016 Jun 29. PMID: 27357569

Oesterreich FC, Herzel L, Straube K, Hujer K, Howard J, Neugebauer KM: Splicing of Nascent RNA Coincides with Intron Exit from RNA Polymerase II. Cell. 2016 Apr 7; 2016 Mar 24. PMID: 27020755

Müller-McNicoll M, Botti V, de Jesus Domingues AM, Brandl H, Schwich OD, Steiner MC, Curk T, Poser I, Zarnack K, Neugebauer KM: SR proteins are NXF1 adaptors that link alternative RNA processing to mRNA export. Genes Dev. 2016 Mar 1. PMID: 26944680


Herzel L, Neugebauer KM: Quantification of co-transcriptional splicing from RNA-Seq data. Methods. 2015 Sep 1; 2015 Apr 27. PMID: 25929182

Courchaine E, Neugebauer KM: Paraspeckles: paragons of functional aggregation. J Cell Biol. 2015 Aug 17. PMID: 26283795

Neugebauer KM: RNA: master or servant? RNA. 2015 Apr. PMID: 25780198

Heyn P, Kalinka AT, Tomancak P, Neugebauer KM: Introns and gene expression: cellular constraints, transcriptional regulation, and evolutionary consequences. Bioessays. 2015 Feb; 2014 Nov 14. PMID: 25400101

Machyna M, Neugebauer KM, Staněk D: Coilin: The first 25 years. RNA Biol. 2015. PMID: 25970135


Machyna M, Kehr S, Straube K, Kappei D, Buchholz F, Butter F, Ule J, Hertel J, Stadler PF, Neugebauer KM: The coilin interactome identifies hundreds of small noncoding RNAs that traffic through Cajal bodies. Mol Cell. 2014 Nov 6; 2014 Nov 6. PMID: 25514182

Heyn P, Kircher M, Dahl A, Kelso J, Tomancak P, Kalinka AT, Neugebauer KM: The earliest transcribed zygotic genes are short, newly evolved, and different across species. Cell Rep. 2014 Jan 30; 2014 Jan 16. PMID: 24440719

Bieberstein NI, Straube K, Neugebauer KM: Chromatin immunoprecipitation approaches to determine co-transcriptional nature of splicing. Methods Mol Biol. 2014. PMID: 24549674

Müller-McNicoll M, Neugebauer KM: Good cap/bad cap: how the cap-binding complex determines RNA fate. Nat Struct Mol Biol. 2014 Jan. PMID: 24389545


Pabis M, Neufeld N, Steiner MC, Bojic T, Shav-Tal Y, Neugebauer KM: The nuclear cap-binding complex interacts with the U4/U6·U5 tri-snRNP and promotes spliceosome assembly in mammalian cells. RNA. 2013 Aug; 2013 Jun 21. PMID: 23793891

Brugiolo M, Herzel L, Neugebauer KM: Counting on co-transcriptional splicing. F1000Prime Rep. 2013; 2013 Apr 2. PMID: 23638305

Müller-McNicoll M, Neugebauer KM: How cells get the message: dynamic assembly and function of mRNA-protein complexes. Nat Rev Genet. 2013 Apr; 2013 Mar 12. PMID: 23478349

Machyna M, Heyn P, Neugebauer KM: Cajal bodies: where form meets function. Wiley Interdiscip Rev RNA. 2013 Jan-Feb; 2012 Oct 5. PMID: 23042601


Bieberstein NI, Carrillo Oesterreich F, Straube K, Neugebauer KM: First exon length controls active chromatin signatures and transcription. Cell Rep. 2012 Jul 26; 2012 Jul 20. PMID: 22840397

Ankö ML, Neugebauer KM: RNA-protein interactions in vivo: global gets specific. Trends Biochem Sci. 2012 Jul; 2012 Mar 15. PMID: 22425269

Änkö ML, Müller-McNicoll M, Brandl H, Curk T, Gorup C, Henry I, Ule J, Neugebauer KM: The RNA-binding landscapes of two SR proteins reveal unique functions and binding to diverse RNA classes. Genome Biol. 2012. PMID: 22436691


Görnemann J, Barrandon C, Hujer K, Rutz B, Rigaut G, Kotovic KM, Faux C, Neugebauer KM, Séraphin B: Cotranscriptional spliceosome assembly and splicing are independent of the Prp40p WW domain. RNA. 2011 Dec; 2011 Oct 21. PMID: 2202097

Tripsianes K, Madl T, Machyna M, Fessas D, Englbrecht C, Fischer U, Neugebauer KM, Sattler M: Structural basis for dimethylarginine recognition by the Tudor domains of human SMN and SPF30 proteins. Nat Struct Mol Biol. 2011 Nov 20; 2011 Nov 20. PMID: 22101937

Krastev DB, Slabicki M, Paszkowski-Rogacz M, Hubner NC, Junqueira M, Shevchenko A, Mann M, Neugebauer KM, Buchholz F: A systematic RNAi synthetic interaction screen reveals a link between p53 and snoRNP assembly. Nat Cell Biol. 2011 Jun 5; 2011 Jun 5. PMID: 21642980

Carrillo Oesterreich F, Bieberstein N, Neugebauer KM: Pause locally, splice globally. Trends Cell Biol. 2011 Jun; 2011 Apr 27. PMID: 21530266

Domingues AM, Neugebauer KM, Fern R: Identification of four functional NR3B isoforms in developing white matter reveals unexpected diversity among glutamate receptors. J Neurochem. 2011 May; 2011 Mar 14. PMID: 21320125

Brody Y, Neufeld N, Bieberstein N, Causse SZ, Böhnlein EM, Neugebauer KM, Darzacq X, Shav-Tal Y: The in vivo kinetics of RNA polymerase II elongation during co-transcriptional splicing. PLoS Biol. 2011 Jan 11; 2011 Jan 11. PMID: 21264352


Carrillo Oesterreich F, Preibisch S, Neugebauer KM: Global analysis of nascent RNA reveals transcriptional pausing in terminal exons. Mol Cell. 2010 Nov 24. PMID: 21095587

Huranová M, Ivani I, Benda A, Poser I, Brody Y, Hof M, Shav-Tal Y, Neugebauer KM, Stanek D: The differential interaction of snRNPs with pre-mRNA reveals splicing kinetics in living cells. J Cell Biol. 2010 Oct 4. PMID: 20921136

Ankö ML, Neugebauer KM: Long noncoding RNAs add another layer to pre-mRNA splicing regulation. Mol Cell. 2010 Sep 24. PMID: 20864030

Pabis M, Neufeld N, Shav-Tal Y, Neugebauer KM: Binding properties and dynamic localization of an alternative isoform of the cap-binding complex subunit CBP20. Nucleus. 2010 Sep-Oct. PMID: 21326824

Ankö ML, Morales L, Henry I, Beyer A, Neugebauer KM: Global analysis reveals SRp20- and SRp75-specific mRNPs in cycling and neural cells. Nat Struct Mol Biol. 2010 Aug; 2010 Jul 18. PMID: 20639886

Strzelecka M, Trowitzsch S, Weber G, Lührmann R, Oates AC, Neugebauer KM: Coilin-dependent snRNP assembly is essential for zebrafish embryogenesis. Nat Struct Mol Biol. 2010 Apr; 2010 Mar 28. PMID: 20357773

Müller M, Neugebauer KM, Eckmann C: mRNA: a complex(ed) life. Genome Biol. 2010; 2010 May 25. PMID: 20500909

Strzelecka M, Oates AC, Neugebauer KM: Dynamic control of Cajal body number during zebrafish embryogenesis. Nucleus. 2010 Jan-Feb. PMID: 21327108


Sapra AK, Ankö ML, Grishina I, Lorenz M, Pabis M, Poser I, Rollins J, Weiland EM, Neugebauer KM: SR protein family members display diverse activities in the formation of nascent and mature mRNPs in vivo. Mol Cell. 2009 Apr 24. PMID: 19394295


Martinez J, Neugebauer KM: El Sur también existe: processing RNA in the Argentine Patagonia. Meetings on ‘Cell Biology, Signaling and Alternative Splicing’ and ‘Gene Expression and RNA Processing’. EMBO Rep. 2008 Jun; 2008 May 9. PMID: 18464796

Stanek D, Pridalová-Hnilicová J, Novotný I, Huranová M, Blazíková M, Wen X, Sapra AK, Neugebauer KM: Spliceosomal small nuclear ribonucleoprotein particles repeatedly cycle through Cajal bodies. Mol Biol Cell. 2008 Jun; 2008 Mar 26. PMID: 18367544


Listerman I, Bledau AS, Grishina I, Neugebauer KM: Extragenic accumulation of RNA polymerase II enhances transcription by RNA polymerase III. PLoS Genet. 2007 Nov. PMID: 18039033


Klingauf M, Stanek D, Neugebauer KM: Enhancement of U4/U6 small nuclear ribonucleoprotein particle association in Cajal bodies predicted by mathematical modeling. Mol Biol Cell. 2006 Dec; 2006 Sep 20. PMID: 16987958

Stanek D, Neugebauer KM: The Cajal body: a meeting place for spliceosomal snRNPs in the nuclear maze. Chromosoma. 2006 Oct; 2006 Mar 31. PMID: 16575476

Listerman I, Sapra AK, Neugebauer KM: Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells. Nat Struct Mol Biol. 2006 Sep; 2006 Aug 20. PMID: 16921380

Neugebauer KM: Please hold–the next available exon will be right with you. Nat Struct Mol Biol. 2006 May. PMID: 16738604

Neugebauer KM: Keeping tabs on the women: life scientists in Europe. PLoS Biol. 2006 Apr; 2006 Apr 11. PMID: 16602822


Görnemann J, Kotovic KM, Hujer K, Neugebauer KM: Cotranscriptional spliceosome assembly occurs in a stepwise fashion and requires the cap binding complex. Mol Cell. 2005 Jul 1. PMID: 15989964


Stanĕk D, Neugebauer KM: Detection of snRNP assembly intermediates in Cajal bodies by fluorescence resonance energy transfer. J Cell Biol. 2004 Sep 27. PMID: 15452143

Dundr M, Hebert MD, Karpova TS, Stanek D, Xu H, Shpargel KB, Meier UT, Neugebauer KM, Matera AG, Misteli T: In vivo kinetics of Cajal body components. J Cell Biol. 2004 Mar 15. PMID: 15024031


Kotovic KM, Lockshon D, Boric L, Neugebauer KM: Cotranscriptional recruitment of the U1 snRNP to intron-containing genes in yeast. Mol Cell Biol. 2003 Aug. PMID: 12897147

Schaft D, Roguev A, Kotovic KM, Shevchenko A, Sarov M, Shevchenko A, Neugebauer KM, Stewart AF: The histone 3 lysine 36 methyltransferase, SET2, is involved in transcriptional elongation. Nucleic Acids Res. 2003 May 15. PMID: 12736296

Stanĕk D, Rader SD, Klingauf M, Neugebauer KM: Targeting of U4/U6 small nuclear RNP assembly factor SART3/p110 to Cajal bodies. J Cell Biol. 2003 Feb 17; 2003 Feb 10. PMID: 12578909


Neugebauer KM: On the importance of being co-transcriptional. J Cell Sci. 2002 Oct 15. PMID: 12244124